PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00004106001
Common NameGSBRNA2T00004106001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 485aa    MW: 53333 Da    PI: 7.9046
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00004106001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-0596118123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  GSBRNA2T00004106001  96 FVCEICNKGFQRDQNLQLHRRGH 118
                          89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-595118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.06E-695118No hitNo description
SMARTSM003550.01796118IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94996118IPR007087Zinc finger, C2H2
PfamPF121717.7E-596118IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SMARTSM00355240138168IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.06E-6168193No hitNo description
SMARTSM00355180173193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MMNEDILLHQ QVQQQEENMS NLTSASGDQA SVSSGNRTEV SGSNYFPHHQ QQEEQQQFSV  60
PESQPQKKRR NQPGNPDPES EVIALSPKTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRSNK EVIRKKVYVC PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK  180
KYAVQSDCKA HSKTCGTKEY RCDCGTLFSR RDSFITHRAF CEALAEETAR EVVIPQNQNH  240
QPNPLMIQQS SSSSHHQARP TLNISSSSSS SHNITNSLYQ QQSNDQIINY HHHSIPPWLA  300
PQPQDLTSSN PNPSNGGGGG LFSLAASPAM SATALLQKAA QMGSTKTPPL PPTTVSERSA  360
HHNNLTTTMA AMMTSPSGFI SSNNNNNNQV LFQDYNASEF DHNGGEEAFD DTFGGFLRTN  420
VDTTTTSGSD KNKSGGGGGE EGLTRDFLGL RPLISHNEIL SFAGLGNCIS GSASDQLHPK  480
PWQG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122135KLKQRSNKEVIRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.180570.0flower| leaf| seed| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00355DAPTransfer from AT3G13810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3617970.0AF361797.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
GenBankAY0916930.0AY091693.1 Arabidopsis thaliana AT3g13810/MCP4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610759.10.0PREDICTED: protein indeterminate-domain 11-like isoform X1
SwissprotQ9LRW70.0IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A078IP860.0A0A078IP86_BRANA; BnaA01g37250D protein
STRINGBra021510.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.21e-176indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]